Publications by Blake R. Peterson and associates:
46. Zamyatkin, D. F., Parra, F., Martín Alonso, J. M., Harki, D. A., Peterson, B. R., Grochulski,P. and Ng, K. K. S. “Structural Insights into Mechanisms of Catalysis and Inhibition in Norwalk Virus Polymerase” J. Biol. Chem. 2008, accepted for publication.
45. Peterson, B. R. “Receptor-Mediated Endocytosis” The Wiley Encyclopedia of Chemical Biology, in press.
44. Graci, J. D., Harki, D. A., Korneeva, V. S., Edathil, J. P., Too, K., Franco, D., Smidansky, E. D., Paul, A. V., Peterson, B. R., Brown, D. M., Loakes, D., and Cameron, C. E. “Lethal Mutagenesis of Poliovirus is Mediated by a Mutagenic Pyrimidine Analogue”, J. Virol. 2007, 81, 11256-11266.
43. Mottram L. F., Maddox, E. Schwab, M., Beaufils, F., and Peterson, B. R. “A Concise Synthesis of the Pennsylvania Green Fluorophore and Labeling of Intracellular Targets with O6-Benzylguanine Derivatives” Org. Lett. 2007, 9, 3741-3744.
42. Harki, D.A, Graci, J. D., Edathil, J. P., Castro, C., Cameron, C. E., and Peterson, B. R. “Synthesis of a Universal 5-Nitroindole Ribonucleotide and Incorporation into RNA by a Viral RNA-Dependent RNA Polymerase” ChemBioChem, 2007, 8, 1359-1362.
41. Coleman, J. D., Sandeep Prabhu, K., Thompson, J. T., Sreenivasula Reddy, P., Peters, J. M., Peterson, B. R., Reddy, C. C. and Vanden Heuvel, J. P.“The oxidative stress mediator 4-hydroxynonenal is an intracellular agonist of the nuclear receptor peroxisome proliferator-activated receptor-beta/delta (PPARbeta/delta)” Free Radical Biology & Medicine 2007, 42, 1155-1164.[pdf reprint]
40. Boonyarattanakalin, S., Hu, J., Dykstra-Rummel, S., August, A., and Peterson, B. R. “Endocytic Delivery of Vancomycin Mediated by a Synthetic Cell Surface Receptor: Rescue of Bacterially Infected Mammalian Cells and Tissue Targeting In Vivo” J. Am. Chem. Soc. 2007, 129, 268-269.[pdf reprint]
39. Peterson, B. R. “Small Molecule Triggers of Tadpole Metamorphosis” ACS Chem. Biol. 2006, 1, 559-561.[pdf reprint]
38. Harki, D. A., Graci, J. D., Galarraga, J. E., Chain, W. J., Cameron, C. E., and Peterson, B. R. “Synthesis and Antiviral Activity of 5-Substituted Cytidine Analogues: Identification of a Potent Inhibitor of Viral RNA-Dependent RNA Polymerases” J. Med. Chem. 2006, 49, 6166-6169.[pdf reprint]
37. Boonyarattanakalin, S., Martin, S. E., Sun, Q. and Peterson, B. R. “A Synthetic Mimic of Human Fc Receptors: Defined Chemical Modification of Cell Surfaces Enables Efficient Endocytic Uptake of Human Immunoglobulin-G” J. Am. Chem. Soc. 2006, 128, 11463-11470.[pdf reprint]
36. Sandbhy, V., MacBride M.M., Peterson, B. R. and Sen, A. "Silver Bromide Nanoparticles/Polymer Composites: Dual Action Tunable Antimicrobial Materials” J. Am. Chem. Soc. 2006, 128, 9798-9808.[pdf reprint]
News Highlight of Manuscript #36:
"Silver Bromide Shines in Bacteria-Fighting Coating" Chem. Eng. News, 2006, 84 (29), 8.
35. Mottram L. F., Boonyarattanakalin, S. Kovel, R. E. and Peterson, B. R. “The Pennsylvania Green Fluorophore: A Hybrid of Oregon Green and Tokyo Green for the Construction of Hydrophobic and pH-Insensitive Molecular Probes” Org. Lett. 2006, 8, 581-584.[pdf reprint]
News Highlight of Manuscript #35:
"New Fluorescein Adds to Cellular Probe Arsenal" Chem. Eng. News, 2006, 84, 33.
34. Boonyarattanakalin, S., Athavankar, S., Sun, Q. and Peterson, B. R. “Synthesis of an Artificial Cell Surface Receptor that Enables Oligohistidine Affinity Tags to Function as Metal-Dependent Cell-Penetrating Peptides” J. Am. Chem. Soc. 2006, 128, 386-387.[pdf reprint]
33. Peterson, B. R. “Synthetic Mimics of Mammalian Cell Surface Receptors: Prosthetic Molecules that Augment Living Cells” Org. Biomol. Chem. 2005, 3, 3607-3612.[pdf reprint]
Selected as a "Hot Article" by the editors of Org. Biomol. Chem.
32. Clark, D. D. and Peterson, B. R. “Fluorescence-Based Cloning of a Protein Tyrosine Kinase with a Yeast Tribrid System” ChemBioChem 2005, 6, 1442-1448. [pdf reprint]
Selected as the cover article for August 2005.
31. Zhao, X., MacBride, M. M. Peterson, B. R., Pfaff, D. W, and Vasudevan, N. “Calcium flux in neuroblastoma cells is a coupling mechanism between non-genomic and genomic modes of estrogens” Neuroendocrinology 2005, 81, 174-182.30. Boonyarattanakalin, S., Martin, S. E., Dykstra, S. A. and Peterson, B. R. “Synthetic Mimics of Small Mammalian Cell Surface Receptors” J. Am. Chem. Soc. 2004, 126, 16379-16386. [pdf reprint]
News Highlight of Manuscript #30:
Rusk, N. "Alternatives to a Horse" Nature Methods, 2005, 2, 88-89. [pdf reprint]
29. Muddana, S. S., Price A. M., MacBride, M. M. and Peterson, B. R. "11beta-Alkyl-Δ9-19-Nortestosterone Derivatives: High Affinity Ligands and Potent Partial Agonists of the Androgen Receptor " J. Med. Chem. 2004, 47, 4985-4988. [pdf reprint]
28. Zumbuehl, A., Jeannerat, D., Martin, S. E., Sohrmann, M., Stano, P., Vigassy, T., Clark, D. D., Hussey, S. L., Peter, M., Peterson, B. R., Pretsch, E., Walde, P., and Carreira, E. M. "An Amphotericin B-Fluorescein Conjugate as a Powerful Probe for Biochemical Studies of the Membrane" Angew. Chem. Int. Ed. 2004, 43, 5181-5185. [pdf reprint]
27. Muddana, S. S. and Peterson, B. R.“Facile Synthesis of CIDs: Biotinylated Estrone Oximes Efficiently Heterodimerize Estrogen Receptor and Streptavidin Proteins in Yeast Three Hybrid Systems” Org. Lett. 2004, 6, 1409-1412. [pdf reprint]
26. Xu, J., Szakal, C., Martin, S. E., Peterson, B. R., Wucher, A., and Winograd, N. "Molecule-specific Imaging with Mass Spectrometry and a Buckminsterfullerene Probe: Application to Characterizing Solid Phase Synthesized Combinatorial Libraries" J. Am. Chem. Soc. 2004, 126, 3902-3909. [pdf reprint]
25. Athavankar, S. and Peterson, B. R. "Control of Gene Expression with Small Molecules: Biotin-Mediated Acylation of Targeted Lysine Residues in Recombinant Yeast" Chem. Biol. 2003, 10, 1245-1253. [pdf reprint]
24. DeGrazia, M. J., Thompson J., Vanden Heuvel, J. P., and Peterson, B. R. "Synthesis of a High-Affinity Fluorescent PPARgamma Ligand for High-Throughput Fluorescence Polarization Assays" Bioorg. Med. Chem. 2003, 11, 4325-4332. [pdf reprint]
23. Muddana, S. S. and Peterson, B. R. "Fluorescent Cellular Sensors of Steroid Receptor Ligands" ChemBioChem 2003, 4, 848-855. [pdf reprint]
22. Hussey, S. L., Muddana, S. S., and Peterson, B. R. "Synthesis of a beta-Estradiol-Biotin Chimera that Potently Heterodimerizes Estrogen Receptor and Streptavidin Proteins in a Yeast Three Hybrid System" J. Am. Chem. Soc. 2003, 125, 3692-3693. [pdf reprint]
21. Martin, S. E. and Peterson, B. R. "Non-Natural Cell Surface Receptors: Synthetic Peptides Capped with N-Cholesterylglycine Efficiently Deliver Proteins into Mammalian Cells" Bioconjugate Chem. 2003, 14, 67-74. [pdf reprint]
News Highlight of Manuscript #21:
Henry, C. M. "Synthetic Receptors Pull Molecules into Cells" Chem. Eng. News, 2003, 81, 38. [pdf reprint]
20. Clark, D. D. and Peterson, B. R. "Analysis of Protein Tyrosine Kinase Inhibitors in Recombinant Yeast Lacking the ERG6 Gene" ChemBioChem 2003, 4, 101-107. [pdf reprint]
19. Peterson, B. R. "Augmenting Vitamin D to Combat Genetic Disease" Chem. Biol. 2002, 9, 1265-1266. [pdf reprint]
18. Varner, A. S., De Vos, M. L., Creaser, S. P., Peterson, B. R., and Smith, C. D. "A Fluorescence-based High Performance Liquid Chromatographic Method for the Characterization of Palmitoyl Acyl Transferase Activity" Analytical Biochem. 2002, 308, 160-167. [pdf reprint]
17. Harki, D.A, Graci, J. D., Korneeva, V. S., Ghosh, S. K. B., Hong, Z, Cameron, C. E., and Peterson, B. R. "Synthesis and antiviral evaluation of a mutagenic and non-hydrogen bonding ribonucleoside analogue: 1-beta-D-ribofuranosyl-3-nitropyrrole" Biochemistry 2002, 41, 9026-9033. [pdf reprint]
16. Clark, D. D. and Peterson, B. R. "Rapid Detection of Protein Tyrosine Kinase Activity in Recombinant Yeast Expressing a Universal Substrate" J. Proteome Res. 2002, 1, 207-209. [pdf reprint]
15. Hussey S. L. and Peterson, B. R. "Efficient Delivery of Streptavidin to Mammalian Cells: Clathrin-Mediated Endocytosis Regulated by a Synthetic Ligand" J. Am. Chem. Soc. 2002, 124, 6265-6273. [pdf reprint]
14. Martin, S. E. and Peterson, B. R. "A Colorimetric Enzyme-Linked On-Bead Assay for Identification of Synthetic Substrates of Protein Tyrosine Kinases" J. Pept. Sci. 2002, 8, 227-233. [pdf reprint]
13. Creaser, S. P. and Peterson, B. R. "Sensitive and Rapid Analysis of Protein Palmitoylation with a Synthetic Cell-Permeable Mimic of Src Oncoproteins" J. Am. Chem. Soc. 2002, 124, 2444-2445. [pdf reprint]
12. Hussey, S. L., He, E., and Peterson, B. R. "Synthesis of Chimeric 7-alpha-Substituted Estradiol Derivatives Linked to Cholesterol and Cholesterylamine" Org. Lett. 2002, 4, 415-418. [pdf reprint]
11. Hussey S. L., He, E., and Peterson, B. R. "A Synthetic Membrane-Anchored Antigen Efficiently Promotes Uptake of Antifluorescein Antibodies and Associated Protein A by Mammalian Cells" J. Am. Chem. Soc. 2001, 123,12712-12713. [pdf reprint]
Publications from Blake Peterson's Postdoctoral, Graduate, and Undergraduate Studies:
10. Chytil, M., Peterson, B. R., Erlanson, D. A., and Verdine, G. L. "The Orientation of the AP-1 Heterodimer on DNA Strongly Affects Transcriptional Potency" Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 14076-14081.
9. Marti, T., Peterson, B. R., Fürer, A., Mordasini-Denti, T., Zarske, J., Jaun, B., Diederich, F. and Gramlich, V. "Macrocyclic Steroid Receptors by Pd(0)-Catalyzed Cross-coupling Reactions: Dissolution of Cholesterol in Aqueous Solution and Investigations of the Principles Governing Selective Molecular Recognition of Steroidal Substrates" Helv. Chim. Acta 1998, 81, 109-144.
8. Sun, L. J., Peterson, B. R., and Verdine, G. L. "Dual Role of the Nuclear Factor of Activated T Cells Insert Region in DNA Recognition and Cooperative Contacts to Activator Protein 1" Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 4919-4924.
7. Peterson, B. R., Sun, L. J., and Verdine G. L. "A Critical Arginine Residue Mediates Cooperativity in the Contact Interface Between Transcription Factors NFAT and AP-1" Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 13671-13676.
6. Peterson, B. R., Mordasini-Denti, T., and Diederich, F. "Cavity Depth and Width Effects on Cyclophane-Steroid Recognition: Molecular Complexation of Cholesterol and Progesterone in Aqueous Solution" Chem. Biol. 1995, 2, 139-146.
5. Peterson, B. R., Wallimann, P., Carcanague, D. R., and Diederich, F. "Steroid Complexation by Cyclophane Receptors in Aqueous Solution: Substrate Selectivity, Enthalpic Driving Force for Cavity Inclusion, and Enthalpy-Entropy Compensation" Tetrahedron 1995, 51, 401-421.
4. Peterson, B. R. "Steroid Recognition in Aqueous Solution by Novel Monocyclic and Tricyclic Cyclophane Receptors" Ph.D. Dissertation. University of California, Los Angeles. December 1994.
3. Peterson, B. R., and Diederich, F. "Dissolution of Cholesterol in Aqueous Solution by a Synthetic Receptor" Angew. Chem. Int. Ed. Engl. 1994, 33, 1625-1628.
News Highlights of Manuscript #3:
a. "Synthetic Receptor Dissolves Cholesterol in Aqueous Solution" Chem. Eng. News, 1994, 72, 24.
b. Bradley, D. "Crafting a Cage for Cholesterol" Science, 1994, 266, 34.
c. Bylinsky, G. "Cholesterol Cages" Fortune, 1994, 130, 245.
2. Person, R. V., Peterson, B. R., and Lightner, D. A. "Bilirubin Conformational Analysis and Circular Dichroism" J. Am. Chem. Soc. 1994, 116, 42-59.
1. Lightner, D. A., Person, R. V., Peterson, B. R., Puzicha, G., Pu, Y.-M., and Bojadziev, S. "Conformational Analysis and Circular Dichroism of Bilirubin, the Yellow Pigment of Jaundice" In Biomolecular Spectroscopy II, Birge, R. R., Nafie, L. A., Eds., Proc. SPIE 1432, 1991, pp 2-13.
Modified :1/27/05